diff --git a/src/auto_commit_service/scheduler/__pycache__/daemon.cpython-312.pyc b/src/auto_commit_service/scheduler/__pycache__/daemon.cpython-312.pyc
index c159814..94dc027 100644
Binary files a/src/auto_commit_service/scheduler/__pycache__/daemon.cpython-312.pyc and b/src/auto_commit_service/scheduler/__pycache__/daemon.cpython-312.pyc differ
diff --git a/src/auto_commit_service/scheduler/daemon.py b/src/auto_commit_service/scheduler/daemon.py
index 859ec72..7e31a61 100644
--- a/src/auto_commit_service/scheduler/daemon.py
+++ b/src/auto_commit_service/scheduler/daemon.py
@@ -390,6 +390,26 @@ class CommitDaemon:
             f"{len(results) - repos_committed - repos_failed} unchanged"
         )
 
+        # Auto-refresh cache if any "Repository not found" errors occurred
+        if self.settings.recursive_discovery and repos_failed > 0:
+            not_found_errors = [
+                r for r in results
+                if r.status == ProcessStatus.ERROR and
+                r.error and "not found" in r.error.lower()
+            ]
+            if not_found_errors:
+                logger.warning(
+                    f"Detected {len(not_found_errors)} missing repositories, "
+                    f"refreshing cache..."
+                )
+                old_count = len(self.repos)
+                self.repos = self._discover_and_cache_repos()
+                new_count = len(self.repos)
+                logger.info(
+                    f"Cache refreshed: {old_count} -> {new_count} repos "
+                    f"({new_count - old_count:+d})"
+                )
+
         return cycle_result
 
     async def trigger_cycle(self) -> CycleResult: